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cgns

The CFD General Notation System (CGNS) provides a general, portable, and extensible standard for the storage and retrieval of computational fluid dynamics (CFD) analysis data.

Usage

To make this library available, run the following module command

module load libs/gcc/4.4.7/cgns/3.2.1

This will also load the module files for the prerequisite libraries, Open MPI 1.8.3 and HDF5 1.8.14 with parallel support.

Installing

This section is primarily for administrators of the system.

  • This is a prerequisite for Code Saturne version 4.0.
  • It was built with gcc 4.4.7, openmpi 1.8.3 and hdf 1.8.14
module load libs/hdf5/gcc/openmpi/1.8.14
tar -xvzf cgnslib_3.2.1.tar.gz
mkdir /usr/local/packages6/libs/gcc/4.4.7/cgnslib
cd /usr/local/packages6/libs/gcc/4.4.7/cgnslib
mkdir 3.2.1
cd 3.2.1
cmake ~/cgnslib_3.2.1/
ccmake .

Configured the following using ccmake

CGNS_ENABLE_PARALLEL            ON
 MPIEXEC                         /usr/local/mpi/gcc/openmpi/1.8.3/bin/mpiexec
 MPI_COMPILER                    /usr/local/mpi/gcc/openmpi/1.8.3/bin/mpic++
 MPI_EXTRA_LIBRARY               /usr/local/mpi/gcc/openmpi/1.8.3/lib/libmpi.s
 MPI_INCLUDE_PATH                /usr/local/mpi/gcc/openmpi/1.8.3/include
 MPI_LIBRARY                     /usr/local/mpi/gcc/openmpi/1.8.3/lib/libmpi_c
 ZLIB_LIBRARY                    /usr/lib64/libz.so

FORTRAN_NAMING                   LOWERCASE_
 HDF5_INCLUDE_PATH               /usr/local/packages6/hdf5/gcc-4.4.7/openmpi-1.8.3/hdf5-1.8.14/include/
 HDF5_LIBRARY                    /usr/local/packages6/hdf5/gcc-4.4.7/openmpi-1.8.3/hdf5-1.8.14/lib/libhdf5.so
 HDF5_NEED_MPI                    ON
 HDF5_NEED_SZIP                   OFF
 HDF5_NEED_ZLIB                   ON
 CGNS_BUILD_CGNSTOOLS             OFF
 CGNS_BUILD_SHARED                ON
 CGNS_ENABLE_64BIT                ON
 CGNS_ENABLE_FORTRAN              ON
 CGNS_ENABLE_HDF5                 ON
 CGNS_ENABLE_SCOPING              OFF
 CGNS_ENABLE_TESTS                ON
 CGNS_USE_SHARED                  ON
 CMAKE_BUILD_TYPE                 Release
 CMAKE_INSTALL_PREFIX             /usr/local/packages6/libs/gcc/4.4.7/cgnslib/3.2.1

Once the configuration was complete, I did

make
make install

Module File

Module File Location: /usr/local/modulefiles/libs/gcc/4.4.7/cgns/3.2.1

#%Module1.0#####################################################################
##
## cgns 3.2.1 module file
##

## Module file logging
source /usr/local/etc/module_logging.tcl
##

proc ModulesHelp { } {
        puts stderr "Makes the cgns 3.2.1 library available"
}

module-whatis   "Makes the cgns 3.2.1 library available"
module load libs/hdf5/gcc/openmpi/1.8.14

set CGNS_DIR /usr/local/packages6/libs/gcc/4.4.7/cgnslib/3.2.1

prepend-path LD_LIBRARY_PATH $CGNS_DIR/lib
prepend-path CPATH $CGNS_DIR/include