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Warning

Iceberg reaches end-of-life on 30th November 2020. If you are running jobs on Iceberg then you need to take urgent action to ensure that your jobs/scripts will run on ShARC or Bessemer. If you have never used ShARC or Bessemer then now is the time to test your scripts. Not all software on Iceberg is available on ShARC/Bessemer.

MrBayes

MrBayes is a program for the Bayesian estimation of phylogeny.

Interactive Usage

After connecting to Iceberg (see Establishing a SSH connection), start an interactive session with the qrshx command.

The latest version of MrBayes (currently 3.2.6) is made available with the command

module load apps/gcc/4.4.7/mrbayes

Alternatively, you can load a specific version with

module load apps/gcc/4.4.7/mrbayes/3.2.6

This command makes the MrBayes mb binary available to your session.

Installation notes

MrBayes was installed with gcc 4.4.7

tar -xvzf ./mrbayes-3.2.6.tar.gz
ls
cd mrbayes-3.2.6
autoconf
./configure --with-beagle=/usr/local/packages6/libs/gcc/4.4.7/beagle/2.1.2 --prefix=/usr/local/packages6/apps/gcc/4.4.7/mrbayes/3.2.6/
make
make install

This modulefile was installed as /usr/local/modulefiles/apps/gcc/4.4.7/mrbayes/3.2.6