Warning
Iceberg was decommissioned on 30th November 2020. Users of Iceberg need to switch to using ShARC and/or Bessemer instead.
RELION is a software package that performs an empirical Bayesian approach to (cryo-EM) structure de-termination by single-particle analysis. Note that RELION is distributed under a GPL license.
The following module command makes the latest version of gemini available to your session
module load apps/gcc/4.4.7/relion
Alternatively, you can make a specific version available
module load apps/gcc/4.4.7/relion/1.4
These are primarily for system administrators.
Install instructions: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Download_%26_install
RELION was installed using the gcc 4.4.7 compiler and Openmpi 1.8.8
Note - the environment variable RELION_QSUB_TEMPLATE points to an SGE qsub template, which needs customizing to work with our environment
The module file is on the system at /usr/local/modulefiles/apps/gcc/4.4.7/relion/1.4
The contents of the module file is
#%Module1.0#####################################################################
##
## relion module file
##
## Module file logging
source /usr/local/etc/module_logging.tcl
##
proc ModulesHelp { } {
global bedtools-version
puts stderr " Setups `relion-$relionversion' environment variables"
}
set relionversion 1.4
module load apps/gcc/4.4.7/ctffind/3.140609
module load apps/binapps/resmap/1.1.4
module load mpi/gcc/openmpi/1.8.8
prepend-path PATH /usr/local/packages6/apps/gcc/4.4.7/relion/1.4/bin
prepend-path LD_LIBRARY_PATH /usr/local/packages6/apps/gcc/4.4.7/relion/1.4/lib
setenv RELION_QSUB_TEMPLATE /usr/local/packages6/apps/gcc/4.4.7/relion/1.4/bin/relion_qsub.csh
setenv RELION_CTFFIND_EXECUTABLE ctffind3_mp.exe
setenv RELION_RESMAP_EXECUTABLE /usr/local/packages6/apps/binapps/resmap/1.1.4