Attention

Following the recent operating system upgrade, software listings and module load commands now reflect the upgraded system. Some examples and notices are still being updated and may contain outdated guidance.

HTSlib

A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of HTSlib can then be made available with one of the following:

module load HTSlib/1.22.1-GCC-14.3.0

Notes

HTSlib was installed using Easybuild, build details can be found in $EBROOTHTSLIB/easybuild with a given module loaded.

Direct dependencies for latest version of HTSlib