Attention

WARNING: From 9am on 19th August until 5pm on 2nd September there will be no access to the Stanage HPC cluster.

We will send an email to notify you when Stanage is back online and available for job submission.

Bedtools

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.

Interactive usage

After connecting to Bessemer (see Establishing a SSH connection), start an interactive session with the srun --pty bash -i command.

The latest version of bedtools (currently version 2.29.2) is made available with the command:

module load BEDTools/2.29.2-GCC-9.3.0

After this any of the bedtools commands can be run from the prompt.

Bedtools was installed using Easybuild 4.3.1, build details can be found in /usr/local/packages/live/eb/BEDTools/2.29.2-GCC-9.3.0/easybuild/