Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks.
After connecting to Bessemer (see Establishing a SSH connection), start an interactive session with the
srun --pty bash -i command.
The latest version of bedtools (currently version 2.29.2) is made available with the command:
module load BEDTools/2.29.2-GCC-9.3.0
After this any of the bedtools commands can be run from the prompt.
Bedtools was installed using Easybuild 4.3.1, build details can be found in
The module file is on the system at