Attention
WARNING: From 9am on 19th August until 5pm on 2nd September there will be no access to the Stanage HPC cluster.
We will send an email to notify you when Stanage is back online and available for job submission.
VASP
The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.
Usage
VASP 5.4.1 or 5.4.4 can be activated using one of the module load commands below:
module load VASP/5.4.1-intel-2019b
module load VASP/5.4.4-intel-2019b
The VASP executables are vasp_std
, vasp_gam
and vasp_ncl
.
Important
Only licensed users of VASP are entitled to use the code; refer to VASP’s website for license details: https://www.vasp.at/sign_in/registration_form/ . Access to VASP on Bessemer is restricted to members of the unix group hpc_vasp
.
To be added to this group, please contact research-it@sheffield.ac.uk
and provide evidence of your eligibility to use VASP.
Pseudopotential files
VASP Pseudopotentials can be found in the $VASP_ROOT
directory in versioned potpaw
sub-directories after loading the module, e.g. :
$ module load VASP/5.4.1-intel-2019b
$ ls $VASP_ROOT
bin easybuild potpaw_LDA potpaw_PBE
Batch jobs
Users are encouraged to write their own batch submission scripts. The following is an example batch submission script, my_job.sh
, to run vasp_std
and which is submitted to the queue with the command sbatch my_job.sh
.
#!/bin/bash
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=4
#SBATCH --mem=4000
#SBATCH --time 00:30:00
#SBATCH --job-name=VASPTEST
#SBATCH --output=VASPTEST.job
#SBATCH --mail-user=username@sheffield.ac.uk
#SBATCH --mail-type=ALL
module load VASP/5.4.4-intel-2019b
srun --export=ALL vasp_std
The script requests 4 cores using Intel MPI with a runtime of 30 mins and 4 GB of real memory.
Installation notes
VASP 5.4.1 and 5.4.4 were installed using Easybuild, build details can be found in /usr/local/packages/live/eb/VASP/5.4.1-intel-2019b/easybuild
and /usr/local/packages/live/eb/VASP/5.4.4-intel-2019b/easybuild
Module files have been modified to include the VASP Pseudopotentials directory environment variables. Installations have also been modified and had
correctly versioned Pseudopotentials folders symlinked into their $VASP_ROOT
directory from the main Pseudopotentials storage directory as indicated by $PSEUDOPOTENTIAL_DIR
.
VASP Pseudopotential files downloaded from the VASP portal and/or license holders can provide future versions as these are provided under the same license as the program.
The module files are:
These installations were tested by running a batch job using the my_job.sh
batch script above with the input for the “O atom” example (https://www.vasp.at/wiki/index.php/O_atom) from the online VASP tutorials (https://www.vasp.at/wiki/index.php/Category:Tutorials).