HDF5

“HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.”

Usage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

To load this library plus the gompi or iimpi toolchain (and the zlib and Szip libraries) run one of the following:

module load HDF5/1.14.0-gompi-2022b
module load HDF5/1.13.3-gompi-2022a
module load HDF5/1.12.2-gompi-2022a
module load HDF5/1.12.1-gompi-2021b
module load HDF5/1.10.8-gompi-2022a
module load HDF5/1.10.7-gompi-2021a
module load HDF5/1.10.7-gompi-2020b
module load HDF5/1.10.6-gompi-2020a
module load HDF5/1.10.6-iimpi-2020a
module load HDF5/1.10.5-gompi-2019b

Installation notes

This section is primarily for administrators of the system. HDF5 has been installed using the default Easybuild config files.

Build logs and test reports can be found in $EBROOTHDF5/easybuild with a given module loaded.