Attention

GPU users: GPU nodes run EL9, while this documentation still reflects the EL7 software stack.

Run module avail on an EL9 login node, or within an interactive session on the relevant GPU type, to see the software available.

The documentation will be updated once all nodes have migrated to EL9.

RStudio

The RStudio integrated development environment (IDE) is a set of tools built to help you be more productive with R and Python.

Interactive Usage

To use RStudio you will need to be in a flight graphical session on Stanage.

In your flight session open a terminal and load the R and Rstudio modules

module load R/4.2.1-foss-2022a
module load rstudio/2023.12.0-369-x86_64-fedora

Once you have loaded the modules you can launch the RStudio IDE by running the following command:

rstudio --no-sandbox

Installation Notes

RStudio version 2023.12.0-369

Was installed using Easybuild 4.8.1, build details can be found in $EBROOTRSTUDIO/easybuild with the module loaded.

I created the following easy config. (Hasn’t been pushed to the EB community yet)

easyblock = 'Tarball'

name = 'rstudio'
version = "2023.12.0-369-x86_64-fedora"

homepage = 'https://posit.co'
description = """RStudio is an integrated development environment (IDE) for R and Python."""

toolchain = SYSTEM

source_urls = ['https://download1.rstudio.org/electron/centos7/x86_64/']
sources = ['rstudio-%(version)s.tar.gz']
checksums = ['8235b74bb564332788e2adcba95e23e9acd6c387cb42305b885da92e680760b6']

modextrapaths = {
    'PATH': '',
        'LIBRARY_PATH': '',
        'LD_LIBRARY_PATH': '',
}

sanity_check_paths = {
    'files': ["rstudio"],
    'dirs': [],
}

moduleclass = 'devel'

Testing

Testing has been conducted by running an interactive session and running some of the examples found here.