snakemake

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of snakemake can then be made available with one of the following:

module load snakemake/6.1.0-foss-2020b

Notes

snakemake was installed using Easybuild, build details can be found in $EBROOTSNAKEMAKE/easybuild with a given module loaded.

Dependencies for latest version of snakemake