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Sheffield HPC Documentation
  • Stanage
  • Software on Stanage
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  • Icelake and Znver3 (OS: RHEL 7) Packages
  • Bio

Bio

Bioinformatics, biology and biomedical

  • ADMIXTURE
  • AlphaFold
  • BCFtools
  • BEDTools
  • BLAST+
  • BLAT
  • BamTools
  • Bio-DB-HTS
  • BioPerl
  • Biopython
  • Bowtie
  • Bowtie2
  • FreeSurfer
  • GATK
  • GMAP-GSNAP
  • GROMACS
  • HH-suite
  • HISAT2
  • HMMER
  • HTSlib
  • IQ-TREE
  • Jellyfish
  • Kalign
  • LSD2
  • MAFFT
  • NGS
  • OpenMM
  • PLINK
  • RSEM
  • Rosetta
  • SAMtools
  • SRA-Toolkit
  • STAR
  • Salmon
  • Schrodinger
  • StringTie
  • Trinity
  • VCFtools
  • VEP
  • annovar
  • kallisto
  • ncbi-vdb
  • picard
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