VEP

Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Includes EnsEMBL-XS, which provides pre-compiled replacements for frequently used routines in VEP.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of VEP can then be made available with one of the following:

module load VEP/111-GCC-12.2.0

Notes

VEP was installed using Easybuild, build details can be found in $EBROOTVEP/easybuild with a given module loaded.

Dependencies for latest version of VEP