Attention
WARNING: From 8am on 30th June until 5pm on 4th July 2025, there will be no access to the Stanage HPC cluster.
We will try to minimise this downtime and it is possible that Stanage will return to service before 4th July. We will notify you by email when Stanage is back online and available for job submission.
Trinity
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.
Note
This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage
After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:
srun --pty bash -i
A version of Trinity can then be made available with one of the following:
module load Trinity/2.15.1-foss-2022a
Notes
Trinity was installed using Easybuild, build details can be found in $EBROOTTRINITY/easybuild
with a given module loaded.