SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of SAMtools can then be made available with one of the following:

module load SAMtools/1.16.1-GCC-11.3.0

Notes

SAMtools was installed using Easybuild, build details can be found in $EBROOTSAMTOOLS/easybuild with a given module loaded.

Direct dependencies for latest version of SAMtools