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Bowtie

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of Bowtie can then be made available with one of the following:

module load Bowtie/1.3.1-GCC-11.3.0

Notes

Bowtie was installed using Easybuild, build details can be found in $EBROOTBOWTIE/easybuild with a given module loaded.

Direct dependencies for latest version of Bowtie