Attention

The Bessemer HPC service was decommissioned on 2025-10-31 and can no longer be accessed by users. Removal of Bessemer references in our documentation is ongoing

BCFtools

Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of BCFtools can then be made available with one of the following:

module load BCFtools/1.15.1-GCC-11.3.0

Notes

BCFtools was installed using Easybuild, build details can be found in $EBROOTBCFTOOLS/easybuild with a given module loaded.

Direct dependencies for latest version of BCFtools