HISAT2

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of HISAT2 can then be made available with one of the following:

module load HISAT2/2.2.1-gompi-2022a

Notes

HISAT2 was installed using Easybuild, build details can be found in $EBROOTHISAT2/easybuild with a given module loaded.

Dependencies for latest version of HISAT2