Salmon

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of Salmon can then be made available with one of the following:

module load Salmon/1.9.0-GCC-11.3.0

Notes

Salmon was installed using Easybuild, build details can be found in $EBROOTSALMON/easybuild with a given module loaded.

Dependencies for latest version of Salmon