ncbi-vdb

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of ncbi-vdb can then be made available with one of the following:

module load ncbi-vdb/3.0.2-gompi-2022a

Notes

ncbi-vdb was installed using Easybuild, build details can be found in $EBROOTNCBIMINVDB/easybuild with a given module loaded.

Dependencies for latest version of ncbi-vdb