MAFFT

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of MAFFT can then be made available with one of the following:

module load MAFFT/7.490-GCC-11.2.0-with-extensions

Notes

MAFFT was installed using Easybuild, build details can be found in $EBROOTMAFFT/easybuild with a given module loaded.

Dependencies for latest version of MAFFT