Attention
WARNING: From 8am on 30th June until 5pm on 4th July 2025, there will be no access to the Stanage HPC cluster.
We will try to minimise this downtime and it is possible that Stanage will return to service before 4th July. We will notify you by email when Stanage is back online and available for job submission.
annovar
ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others).
Note
This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage
After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:
srun --pty bash -i
A version of annovar can then be made available with one of the following:
module load annovar/20200607-GCCcore-11.2.0-Perl-5.34.0
Notes
annovar was installed using Easybuild, build details can be found in $EBROOTANNOVAR/easybuild
with a given module loaded.