annovar

ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, hg38, as well as mouse, worm, fly, yeast and many others).

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of annovar can then be made available with one of the following:

module load annovar/20200607-GCCcore-11.2.0-Perl-5.34.0

Notes

annovar was installed using Easybuild, build details can be found in $EBROOTANNOVAR/easybuild with a given module loaded.

Direct dependencies for latest version of annovar