kallisto

kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of kallisto can then be made available with one of the following:

module load kallisto/0.48.0-gompi-2022a

Notes

kallisto was installed using Easybuild, build details can be found in $EBROOTKALLISTO/easybuild with a given module loaded.

Dependencies for latest version of kallisto