Attention

WARNING: From 8am on 30th June until 5pm on 4th July 2025, there will be no access to the Stanage HPC cluster.

We will try to minimise this downtime and it is possible that Stanage will return to service before 4th July. We will notify you by email when Stanage is back online and available for job submission.

BLAT

BLAT

Latest Version (Icelake):

3.7

Installed on (Icelake):

2023-10-10

Latest Version (Znver3):

N/A

Installed on (Znver3):

N/A

URL:

https://genome.ucsc.edu/goldenPath/help/blatSpec.html

BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more.

Note

This is an autogenerated page, more detail including examples may be available for this package. Please see the first section of Software on Stanage

After connecting to Stanage (see Establishing a SSH connection), start an interactive session with the following command:

srun --pty bash -i

A version of BLAT can then be made available with one of the following:

Icelake

module load BLAT/3.7-GCC-11.3.0

Notes

BLAT was installed using Easybuild, build details can be found in $EBROOTBLAT/easybuild with a given module loaded.

Direct dependencies for latest version of BLAT

• freetype/2.12.1-GCCcore-11.3.0

• GCC/11.3.0

• libiconv/1.17-GCCcore-11.3.0

• libpng/1.6.37-GCCcore-11.3.0

• MariaDB/10.9.3-GCC-11.3.0

• OpenSSL/1.1

• util-linux/2.38-GCCcore-11.3.0

• zlib/1.2.12-GCCcore-11.3.0